Genomorama is a versatile software that enables users to visualize and analyze multiple genomes across various scales efficiently. It is an essential tool for analyzing complex data in genomics.
Genomorama is a fantastic software program designed specifically to display multiple genomes in an interactive way. The term genome in this context refers to DNA sequences, along with an (optional) set of annotations for indicating which sub-sequences correspond to genes, proteins, and RNAs among others.
Genomorama supports comparative genomics, sequence comparison, and sequence analysis using an intuitive and easy-to-use interface, taking advantage of the visualization power of modern computers (via OpenGL) and the substantial bioinformatic infrastructure provided by the NCBI (via the NCBI C toolkit).
The program is written in portable, highly optimized C++, and it comes in three versions that make it compatible with most modern operating systems, including OS X (Carbon), Microsoft Windows (MFC), and Linux (Motif). What's more, Genomorama's source code and executables are freely available.
Here's a breakdown of some of Genomorama's standout features:
- High performance is an essential characteristic of Genomorama, and that has not been compromised by its cross-platform nature.
- The program takes advantage of OpenGL graphics, making the most of the video-game optimized graphics cards available in most desktop and laptop computers.
- The use of C++ allows for complete and transparent utilization of system resources like memory.
- Native windowing toolkits, including Carbon, MFC, and Motif, ensure ease of use and responsiveness, regardless of the user's operating system.
- Genomorama is designed to work as a stand-alone, self-contained executable, reducing dependence on third-party applications.
- The program's source code is freely available, ensuring unparalleled flexibility for advanced users.
- Genomorama boasts an attractive and fully featured user interface, with a clean and uncluttered design.
- It also supports multi-scale rendering (Semantic Zooming) that displays relevant details while maintaining readability, offering optimal user experience.
- Zooming, panning, and exploring genomes of any size is easy with Genomorama, thanks to its keyboard and mouse support.
- The program offers an array of output formats, including attractive WYSIWYG Postscript and GIF formats, producing publication-quality images.
- Genomorama is built to support genome analysis, with features such as "forward and reverse" DNA hybridization based searches, PCR primer visualization and output, hybridization probe binding site identification, Padlock probe binding location identification, and automatic PCR primer identification based on user-specified criteria.
- Furthermore, the program can display and search an arbitrary number of genomes, limited only by the user's computer memory.
- Finally, users can access and directly search the NCBI Entrez database, harnessing the power of the NCBI toolkit.
All things considered, Genomorama is an indispensable tool for anyone interested in comparative genomics, sequence comparison, and sequence analysis.
Genomorama supports comparative genomics, sequence comparison, and sequence analysis using an intuitive and easy-to-use interface, taking advantage of the visualization power of modern computers (via OpenGL) and the substantial bioinformatic infrastructure provided by the NCBI (via the NCBI C toolkit).
The program is written in portable, highly optimized C++, and it comes in three versions that make it compatible with most modern operating systems, including OS X (Carbon), Microsoft Windows (MFC), and Linux (Motif). What's more, Genomorama's source code and executables are freely available.
Here's a breakdown of some of Genomorama's standout features:
- High performance is an essential characteristic of Genomorama, and that has not been compromised by its cross-platform nature.
- The program takes advantage of OpenGL graphics, making the most of the video-game optimized graphics cards available in most desktop and laptop computers.
- The use of C++ allows for complete and transparent utilization of system resources like memory.
- Native windowing toolkits, including Carbon, MFC, and Motif, ensure ease of use and responsiveness, regardless of the user's operating system.
- Genomorama is designed to work as a stand-alone, self-contained executable, reducing dependence on third-party applications.
- The program's source code is freely available, ensuring unparalleled flexibility for advanced users.
- Genomorama boasts an attractive and fully featured user interface, with a clean and uncluttered design.
- It also supports multi-scale rendering (Semantic Zooming) that displays relevant details while maintaining readability, offering optimal user experience.
- Zooming, panning, and exploring genomes of any size is easy with Genomorama, thanks to its keyboard and mouse support.
- The program offers an array of output formats, including attractive WYSIWYG Postscript and GIF formats, producing publication-quality images.
- Genomorama is built to support genome analysis, with features such as "forward and reverse" DNA hybridization based searches, PCR primer visualization and output, hybridization probe binding site identification, Padlock probe binding location identification, and automatic PCR primer identification based on user-specified criteria.
- Furthermore, the program can display and search an arbitrary number of genomes, limited only by the user's computer memory.
- Finally, users can access and directly search the NCBI Entrez database, harnessing the power of the NCBI toolkit.
All things considered, Genomorama is an indispensable tool for anyone interested in comparative genomics, sequence comparison, and sequence analysis.
What's New
Version 1.54: N/A