mspire

Mspire is an impressive collection of software tools that are designed specifically to work with MS proteomics data in Ruby. The main goal of this platform is to offer support for open standards such as mzXML, Peptide/Protein Prophet, and parsers for mzData and the TPP while providing other necessary functionalities for efficiently working with mass spectrometry data in Ruby.

The project is primarily focusing on five major areas, including SEQUEST data specifically for Bioworks 3.2-3.3 output, mzXML, mzData, ProteinProphet, and the preparation of files for obiwarp. There are several validation options offered on this platform, which includes various decoy database search options like reverse/shuffle, concatenated/separate, and hashing options using amino acid sequence + charge.

Users can also access amino acid search options like unblocked cysteines, transmembrane predictions using Phobius or TopPred, generic sample bias, and defined sample options. With Mspire, you can explore your MS proteomics data in Ruby with ease and precision, and get the accurate results you need.