Software facilitating exploratory examination of genomic segmentations.
If you're in need of a genomic segmentation tool designed to help contextualize this type of data within the genome itself, segtools may be just the solution. As a Python library that utilizes R for graphics, segtools comes loaded with several modules that can provide detailed analysis on your segmentation and help you understand its biological relevance.
To use segtools, your segmentations should be in BED format with the name field assigned to the specific segment label. With segtools' modules, you can easily compare the different properties of segment labels with each other to gain more insight into what each means. If you ever need more information or assistance, don't hesitate to reach out to the author.
Installation of segtools and its prerequisites is a breeze with its interactive install script. By typing two simple commands on your Unix system - 'wget' followed by 'python install.py' - you can download, install, and set up your environment for segtools in no time.
To use segtools, your segmentations should be in BED format with the name field assigned to the specific segment label. With segtools' modules, you can easily compare the different properties of segment labels with each other to gain more insight into what each means. If you ever need more information or assistance, don't hesitate to reach out to the author.
Installation of segtools and its prerequisites is a breeze with its interactive install script. By typing two simple commands on your Unix system - 'wget' followed by 'python install.py' - you can download, install, and set up your environment for segtools in no time.
What's New
Version 0.1.1: N/A