A free and open-source software for visualizing whole-genome arrangement.
Tandemizer is a software tool that utilizes the MUMmer suite's "exact-tandems" program to compare TABs among two or more prokaryotic whole genomes. The tool is designed to be extensible and flexible. It allows users to visualize whole-genome arrangement among multiple genomes based upon TABs, with correlations to GenBank annotations for genes and other features. Additionally, users can drill-down to the sequence level for polymorphism analysis.
Tandemizer has been used for various purposes. For example, it has been used to search for correlations with markers for virulence and antibiotic resistance. It has also been used to visually assess the degree of relatedness among the genomes of Staphylococcus, Streptococcus, and Francisella. Moreover, it can assess the relationship of the IS element.
It is worth noting that Tandemizer is licensed and distributed under the terms of the Academic and Research License. Overall, looking at the features and capabilities of Tandemizer, it appears to be a useful and versatile software for comparing prokaryotic whole genomes.
Tandemizer has been used for various purposes. For example, it has been used to search for correlations with markers for virulence and antibiotic resistance. It has also been used to visually assess the degree of relatedness among the genomes of Staphylococcus, Streptococcus, and Francisella. Moreover, it can assess the relationship of the IS element.
It is worth noting that Tandemizer is licensed and distributed under the terms of the Academic and Research License. Overall, looking at the features and capabilities of Tandemizer, it appears to be a useful and versatile software for comparing prokaryotic whole genomes.
What's New
Version 1.0: N/A