TransposonPSI is a software tool that detects similarity between protein and nucleic acid sequences. It is an analysis tool that uses transposable elements to identify homology. Its purpose is to aid researchers in identifying homology patterns between different biological sequences.
If you're looking for an effective analysis tool to identify protein or nucleic acid sequence homology, TransposonPSI is definitely worth checking out. This software utilizes PSI-Blast, along with a collection of (retro-)transposon ORF homology profiles, to identify statistically significant alignments. This means that you can easily detect potential transposon ORFs within a protein set, or identify regions of transposon homology within a larger genome sequence.
One of the key benefits of TransposonPSI is its ability to identify degenerate transposon homologies that may not be detected using other methods. Even when using RepeatMasker and an associated nucleotide library of repetitive elements, some genome sequences may still escape identification and masking. TransposonPSI provides a reliable solution to this problem.
At The Institute for Genomic Research, TransposonPSI has been routinely used to assist in the discovery of mobile elements across eukaryotes, including protozoa, plants, fungi, and animals. Its robust capabilities make it a valuable addition to any genomics toolkit.
One of the key benefits of TransposonPSI is its ability to identify degenerate transposon homologies that may not be detected using other methods. Even when using RepeatMasker and an associated nucleotide library of repetitive elements, some genome sequences may still escape identification and masking. TransposonPSI provides a reliable solution to this problem.
At The Institute for Genomic Research, TransposonPSI has been routinely used to assist in the discovery of mobile elements across eukaryotes, including protozoa, plants, fungi, and animals. Its robust capabilities make it a valuable addition to any genomics toolkit.
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