This software measures the likelihood of two genomes belonging to the same species. It is user-friendly and based on the programming language Java.
One of the key features of JSpecies is its ability to calculate the average nucleotide average (ANI). This is done using two different methods: BLAST (ANIb) and MUMmer (ANIm). Basically, ANI values are calculated by comparing pairs of genome stretches, and the reliability of the results is closely tied to the quality and quantity of the aligned DNA fragments.
Overall, JSpecies is an excellent tool for biologists who need to compare genotypes across different species or subspecies. It is easy to use and completely free, making it a great choice for researchers on a budget.
Version 1.0 RC1: N/A