Remediator converts PDB files between PDBv2.3 and PDBv3.0 formats
Version: 1.56.080328Remediator converts PDB files between PDBv2.3 and PDBv3.0 formats. It can accurately and rapidly convert in either direction: old to new OR new to old.
Operating System: Mac OS X
Atom records of type ATOM, HETATM, TER, ANISOU, SIGATM, SIGUIJ, and LINK are converted, as are DNA residue names(e.g., A, G,C, T of v2.3 cf. DA, DG, DC, DT of v3.0).
Remediator is available as a Perl or Python script. The scripts should work on any type of computing platform, as long as your operating system has the appropriate framework.
Remediator uses the remediated Chemical Component Dictionary as its "rosetta stone" for conversion. The necessary information is incorporated into a hash table - internally for the Perl script, as an external file for the Python script.
· Python or Perl
NOTE: You may need to edit the first line, the shebang, of the script to point at your computer's Perl or Python location.