This software allows for the creation, checking, annotation, and merging of SBML models, a language commonly used in systems biology.
If you're looking for a tool that can help you create, check, annotate, merge SBML models, then semanticSBML might be just the thing you need. SBML is an industry-leading standard format suited for mathematical models in systems biology, and combining various SBML models manually can be quite challenging. But with semanticSBML, the process is made much easier.
One of the program's main features is that it includes both a graphical user interface and a console interface which can process batch jobs. This feature caters to users of different skill levels, allowing them to access the tool's capabilities easily. The tool also provides a programming interface for tool developers.
In SBML, model component names can be chosen arbitrarily. However, annotations are needed to identify the biological meaning of these components. Annotations can be specified in a MIRIAM-compliant format according to the proposal by N. LeNovere and A. Finney for species, parameter, compartment, reaction, and event tags. By adding these annotations, semanticSBML can help you to identify the biological meaning of your model components.
If you find that you have missing annotations, you can use SBMLannotate to add them. Overall, semanticSBML is an efficient and user-friendly tool that can assist you in dealing with SBML models.
One of the program's main features is that it includes both a graphical user interface and a console interface which can process batch jobs. This feature caters to users of different skill levels, allowing them to access the tool's capabilities easily. The tool also provides a programming interface for tool developers.
In SBML, model component names can be chosen arbitrarily. However, annotations are needed to identify the biological meaning of these components. Annotations can be specified in a MIRIAM-compliant format according to the proposal by N. LeNovere and A. Finney for species, parameter, compartment, reaction, and event tags. By adding these annotations, semanticSBML can help you to identify the biological meaning of your model components.
If you find that you have missing annotations, you can use SBMLannotate to add them. Overall, semanticSBML is an efficient and user-friendly tool that can assist you in dealing with SBML models.
What's New
Version 1.0.9: N/A